PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo13G0023100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C2H2

Protein Properties

Length: 167aa MW: 17833.1 Da PI: 9.6962

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo13G0023100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+++F+++ L H++ H Spipo13G0023100 40 FHCLYCSRRFTTSQALGGHQNAH 62 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.7E-6	37	67	No hit	No description
Gene3D	G3DSA:3.30.160.60	0.001	38	66	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	7.8E-6	39	64	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.323	40	67	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MEKQPQEEVF FALLKPPLPA SPSPRSSPGG RKQPPTNRRF HCLYCSRRFT TSQALGGHQN 60 AHRRERAAAA AAARRSGSAI SSDSFLRAAT APSPTPSRSA APLRPALWIE PPSPVFYVYY 120 DGCCLRLDQP AGVPSATCDS SSSSPSPSPP GRQPLVDLDL DLSLHL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	2e-06	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Spipo13G0023100