PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0027200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 274aa    MW: 29811.8 Da    PI: 4.7292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0027200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-1191133855
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ErrRR r+++++ eLr+l+P+      +K++Ka+i   A+ Y+++Lq
  Spipo13G0027200  91 SERRRRGRMKEKLYELRSLVPNI-----TKMDKASIIGDAIMYVRDLQ 133
                      6*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.76483132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1684148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.13E-1285135No hitNo description
Gene3DG3DSA:4.10.280.103.5E-1687149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1389138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-891133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MESSPSLAVQ PPAAVNFSNA NQFDRMDCLL VGGFAEFGEE DLCSSVVEQV LGFYSDGDPR  60
LVEADAEEDD SSGTTGGRSR LGRDRARTLV SERRRRGRMK EKLYELRSLV PNITKMDKAS  120
IIGDAIMYVR DLQGQAKRLA EEVTSLETHA KTEDVCSSPV QPHEPEKPIS VDPVSKGDML  180
ELSACGLGDK RFHLRLVCQK GEGTAAALYR AIERLTFLQQ ESSTFSTISG LHEVTLTMKV  240
GGCDGEMDAA ALKLWVMTAL LDEGFGFHMA ATL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788896.21e-60transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A2H3XUU63e-59A0A2H3XUU6_PHODC; transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGXP_008788896.17e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.16e-48FER-like regulator of iron uptake