PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo13G0033400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 109aa MW: 12122 Da PI: 9.2573

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo13G0033400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	112.3	2.3e-35	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m vkgLtl+h+kSHLQkYRl Spipo13G0033400 36 KPRLRWTAELHERFVDAVNQLGGPDKATPKTIMRTMAVKGLTLYHLKSHLQKYRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-34	33	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.451	33	93	IPR017930	Myb domain
SuperFamily	SSF46689	7.17E-19	35	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-25	36	91	IPR006447	Myb domain, plants
Pfam	PF00249	5.1E-9	38	89	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
AFLVWSCCPG GEDMFAREEY RGPLGDACLV LTTDPKPRLR WTAELHERFV DAVNQLGGPD 60 KATPKTIMRT MAVKGLTLYH LKSHLQKYRL GTKSKEVSDS PKDGRAIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-22	36	89	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-22	36	89	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-22	36	89	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-22	36	89	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264109.1	4e-45	PREDICTED: protein PHR1-LIKE 3-like isoform X1
Swissprot	Q94A57	1e-43	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1D1XSR8	2e-49	A0A1D1XSR8_9ARAE; Myb family transcription factor APL
STRING	XP_010264109.1	2e-44	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20734	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-46	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo13G0033400

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]