PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0048400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 426aa    MW: 47015.8 Da    PI: 4.7664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0048400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.68.4e-17239284555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Spipo13G0048400 239 HNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 284
                      9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.866234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-20234294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-20239292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-14239284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-17239288No hitNo description
SMARTSM003531.1E-18240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDDDPICRLG RGEDELVELL WQNGQVVMHS QTHREANGRP CQKPESAPRC AEPLDPLPDP  60
ARNEDASPWV QYPIDDPLMR DFYLDFFYGL PAAEPTEARI AVEPPSGQFL EKEGAELGWA  120
QVGGEESSPL MGSNETEIHG SCSNSVKVPS AKGSDDSQTG LSYSEVQEAG VASPLGGSAL  180
SFRVDSQQST DTGSYKKRKQ KDVDGSQCQN EEAEDESAEA TRPYRRSVLA RRARVAHVHN  240
LSERRRRDRI NEKMRALQEL IPHCNKTDKA SMLDEAIEYL KSLQLQVQMM LMGGGMSPVM  300
FSGLQHLAPP MGLVMSQNLM PTFTRPIQLP RSQSYPAYLA FQHLQSSPQV MNLYGYGSKL  360
VEASQMLSMA ASNEGGGSAA LPEFFPNVEV EDALLILIEL TNLPMQHGEA HRAMVARMWH  420
NNDTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZH681e-73A0A1D1ZH68_9ARAE; Transcription factor PIF4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-32phytochrome interacting factor 3-like 5