PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0001400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LBD
Protein Properties Length: 130aa    MW: 15268.5 Da    PI: 10.6476
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0001400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26068.61.4e-2142128187
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                      aC+aC+ +rr+C++d +la+yfp +q+ +++ +++l G s+ +k+ k+ +  +r++am + +++A++r +dPv+Ga+gv   l+ q+
  Spipo14G0001400  42 ACSACRDQRRRCEPDSPLARYFPRHQTGDYKWARRLLGLSKFSKVRKSCEGRQRHRAMWCKIFQAHIRRDDPVRGAFGVACWLKDQI 128
                      7******************************************************************************99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.88841129IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-1942128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MQNYSSYLSS RPFLLPLPLG FHPIYRWEGE RTDGVESGKQ HACSACRDQR RRCEPDSPLA  60
RYFPRHQTGD YKWARRLLGL SKFSKVRKSC EGRQRHRAMW CKIFQAHIRR DDPVRGAFGV  120
ACWLKDQIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.14e-18LOB domain-containing protein 7