PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo14G0011300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 458aa MW: 49545 Da PI: 6.0927

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo14G0011300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.9	1.8e-08	244	270	5	30
HHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 5 hnerErrRRdriNsafeeLrellPk.a 30 h + Er+RR+++N++f+ Lr llP+ Spipo14G0011300 244 HMISERKRREKLNESFSALRMLLPPgT 270 8899********************944 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.92E-11	236	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.134	239	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.26E-7	241	268	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.6E-11	243	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-6	244	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-7	245	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.92E-11	314	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-11	316	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MDGGFAGQPS CYAASTSQQG PFDPYGSSFC DQAGLPGFGF KDGLDCLEVN ESPMSSGASG 60 LTQSQFYQVA AQMGVESMMI AGEFVPQSPL GEFFQPDQNL RSLSSSSMRS LSVGSPSSVE 120 QVAHRVTILA YDQFQGVQFP TPTGDDASMV RAMLAVMSSS SSSSSPRPSA TSSAWHGQGR 180 SRGGAFKPYD TAAAAAVAGV EARNLSPGQE MMKRIFSLLR RISPMSGGEA RLQESRPTTN 240 QLHHMISERK RREKLNESFS ALRMLLPPGT KARPRLPLSS SFFSPSSSSS SSSPNTSRLR 300 LLPRLNLISA AFVFLKDKAS VLASAIDQVN ALRSQISDLE EKNRSMEMSI LPPDEEDGEQ 360 EIIRMTSAIE PSSGKQVLEL RVTVPAECDM IDLALHILEF LRERPEVNLL SLDASIYLRQ 420 KNSVRLTILT IRLQGGEGWD ERPFKEAVSR AINEALA*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MDGGFAGQPS CYAASTSQQG PFDPYGSSFC DQAGLPGFGF KDGLDCLEVN ESPMSSGASG  60
LTQSQFYQVA AQMGVESMMI AGEFVPQSPL GEFFQPDQNL RSLSSSSMRS LSVGSPSSVE  120
QVAHRVTILA YDQFQGVQFP TPTGDDASMV RAMLAVMSSS SSSSSPRPSA TSSAWHGQGR  180
SRGGAFKPYD TAAAAAVAGV EARNLSPGQE MMKRIFSLLR RISPMSGGEA RLQESRPTTN  240
QLHHMISERK RREKLNESFS ALRMLLPPGT KARPRLPLSS SFFSPSSSSS SSSPNTSRLR  300
LLPRLNLISA AFVFLKDKAS VLASAIDQVN ALRSQISDLE EKNRSMEMSI LPPDEEDGEQ  360
EIIRMTSAIE PSSGKQVLEL RVTVPAECDM IDLALHILEF LRERPEVNLL SLDASIYLRQ  420
KNSVRLTILT IRLQGGEGWD ERPFKEAVSR AINEALA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	252	ERKRRE
2	248	253	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10174	31	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo14G0011300