PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo14G0014400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 182aa MW: 19510 Da PI: 7.5714

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo14G0014400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	102.9	1.9e-32	16	69	3	56
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrr 56 e++l+cprC+stntkfCy+nn+s++qPry+Ck+C r+Wt+GG+lrn+P+Gg+ Spipo14G0014400 16 EQNLPCPRCQSTNTKFCYFNNHSITQPRYLCKGCGRHWTHGGSLRNIPIGGAPP 69 6889**********************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-19	16	73	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-29	17	67	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.024	19	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	21	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MQHPTAAAAA AVLVVEQNLP CPRCQSTNTK FCYFNNHSIT QPRYLCKGCG RHWTHGGSLR 60 NIPIGGAPPE EHQARRRSNN RPAVIPTAVP QPQPPLYHPN IEATSSLYAS TAEIDHLMLN 120 MTGSFTALLS SDSVFHNVVD NFQEEPAFLA PRGISSVGYT TLDLLSFPSG GASTPPPPPT 180 P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	1e-26	Dof family protein

Link Out ? help Back to Top
Phytozome	Spipo14G0014400