PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo14G0014500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 151aa MW: 15606.8 Da PI: 11.4239

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo14G0014500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	40.9	4.4e-13	2	37	27	62
zf-Dof 27 sqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + Pr +Ck+ r+Wt+GG+lr +P+G g rkn+k+s Spipo14G0014500 2 ASPRLLCKSRGRHWTRGGSLRSIPIGLGFRKNNKRS 37 67******************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-6	1	35	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-8	3	35	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MASPRLLCKS RGRHWTRGGS LRSIPIGLGF RKNNKRSAGA PSSMAKQSSN QPGLDARCPP 60 PPDQGAVSLC ASTSGIDDVM LNLLGSFTDL LSLHGHLRNI LGTFPGLALA FAGPSWWSNV 120 ASIFPGIFFG HGMGTRAASG TSSPSTCGIQ *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-11	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Spipo14G0014500