PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo14G0014600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 199aa MW: 21453.2 Da PI: 8.7541

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo14G0014600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.6	1.2e-37	27	85	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e++l+cprC+stntkfCyynny+ +qPr+fCkaCrryWt+GG+lrn+PvGg++rkn k+ Spipo14G0014600 27 ERNLRCPRCESTNTKFCYYNNYNFAQPRHFCKACRRYWTRGGSLRNIPVGGASRKNTKR 85 67899***************************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-25	26	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-32	29	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.612	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MQNPTAEAAA ALLKSNMEAP PRVPAEERNL RCPRCESTNT KFCYYNNYNF AQPRHFCKAC 60 RRYWTRGGSL RNIPVGGASR KNTKRTAATA SSHNKRSVHR AAVFPAAAPA PPPPPPLDAL 120 NVEPVSSLHS STGDIDRLML NATGSFTALL FSEAQFGNLL GSFHEEAPDL ATFDLRSPTD 180 GGAAPPPPPR EVPLPEDF*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361472	2e-37	AK361472.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1141F22.
GenBank	AK364583	2e-37	AK364583.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026L11.
GenBank	AY955493	2e-37	AY955493.2 Triticum aestivum Dof1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397467.1	1e-45	PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBL	A0A1U8ALW5	2e-43	A0A1U8ALW5_NELNU; dof zinc finger protein DOF3.1-like
TrEMBL	A0A2H3Z074	2e-43	A0A2H3Z074_PHODC; dof zinc finger protein DOF3.1-like
STRING	XP_008806550.1	3e-44	(Phoenix dactylifera)
STRING	XP_010267036.1	3e-44	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-38	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Spipo14G0014600