PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0024100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 268aa    MW: 29491.9 Da    PI: 6.6825
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0024100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.81.7e-11145190550
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      kr +r   NR +A+rsR RK+++i eLe+ v +L++e  +L  ++ 
  Spipo14G0024100 145 KRIKRILANRQSAQRSRVRKLQYISELEQSVMSLQTEVAELSPRVA 190
                      999**********************************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-15141205IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.703143199IPR004827Basic-leucine zipper domain
PfamPF001704.7E-10145194IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-14145199No hitNo description
SuperFamilySSF579591.61E-11145199No hitNo description
CDDcd147034.72E-22146196No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MANVFPASSA HAGAAASHLC WVDEFFDFSS AAQRGAQGRS LSDTLSFFDP QAAASTDESH  60
SDGTMAKGNR VQDFDRLGVD HLMSMFSDSI PSDHDSVHEE KIDGRSAQEV ADPNSQEELS  120
RCKIEPPEAS GMQQVLAAES AVDPKRIKRI LANRQSAQRS RVRKLQYISE LEQSVMSLQT  180
EVAELSPRVA FLDHQRSLLT VGNSALKQRI AALAQDKIFK DAHQEVLKKE IERLRQVYSQ  240
KNLKKMPSAV GPPPSPHHKE RSTEQSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279202.11e-81PREDICTED: basic leucine zipper 61-like
SwissprotQ9M2K43e-68BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A1D1YKZ37e-85A0A1D1YKZ3_9ARAE; Transcription factor RF2a
STRINGXP_010279202.15e-81(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.13e-70bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]