PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo14G0032300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 240aa MW: 27031.6 Da PI: 4.4663

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo14G0032300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.9e-12	81	123	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ E ell++a++q+G++ ++ I + ++ +Rt+ q+k+++ + Spipo14G0032300 81 ERWSKMETELLYQAIRQFGTD-FAMIQQLFP-NRTRHQIKLKFKN 123 69*****************.*****.********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.8E-28	73	158	No hit	No description
PROSITE profile	PS51293	10.381	78	129	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	3.8E-9	79	124	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-11	79	127	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.09E-11	81	129	IPR009057	Homeodomain-like
CDD	cd00167	3.04E-9	82	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MRHLLLNADS QAMMPIHGVG FQIDDEGLQG VSKEAAKTGQ PGQDQSSAND MNRGGDDADH 60 PVKISSTKLN YHTYMNKPRS ERWSKMETEL LYQAIRQFGT DFAMIQQLFP NRTRHQIKLK 120 FKNEERKHPL QIADAVVHRS KDHSQFELVI ERLKAQEKEA MNSVDTAADP GAESQAMAAE 180 NEEEGGGKSG DKKEELEVDD WDQQADDPED QDVFDWSEYD IPGSSPTYDA DKSQYNETL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010936674.1	3e-53	uncharacterized protein LOC105056239 isoform X5
Refseq	XP_010936677.1	2e-53	uncharacterized protein LOC105056239 isoform X7
Refseq	XP_026659086.1	3e-53	uncharacterized protein LOC103703755 isoform X7
Refseq	XP_029116108.1	1e-53	uncharacterized protein LOC105059291 isoform X1
Refseq	XP_029116109.1	1e-53	uncharacterized protein LOC105059291 isoform X2
Refseq	XP_029116110.1	9e-54	uncharacterized protein LOC105059291 isoform X3
Refseq	XP_029116111.1	4e-54	uncharacterized protein LOC105059291 isoform X4
Refseq	XP_029123725.1	2e-53	uncharacterized protein LOC105056239 isoform X7
Refseq	XP_029123726.1	2e-53	uncharacterized protein LOC105056239 isoform X8
TrEMBL	A0A1D1XRG6	1e-69	A0A1D1XRG6_9ARAE; Transcription factor TFIIIB component B (Fragment)
STRING	XP_008784941.1	2e-52	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2595	29	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	8e-29	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Spipo14G0032300