PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo14G0042300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 311aa MW: 33058.5 Da PI: 7.8297

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo14G0042300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.9	4.2e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C ++p++ p++q +++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q Spipo14G0042300 4 SCNGCRVLRKGCSENCSIRPCLqwissPESQGNATVFLAKFYGRAGLMNLINEGPENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQ 97 6******************************************************************************************* PP DUF260 90 lkaelallke 99 ++++++l ++ Spipo14G0042300 98 AAVDAVLKGT 107 99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.757	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWISS PESQGNATVF LAKFYGRAGL MNLINEGPEN 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV DAVLKGTPIL QISSDSATSA 120 PAPPFIKASS FDIRHVAKDH SSDGYDLHKV NKATRPRFKR SANPSQIHRD GAAAVVAAAG 180 KPNSDRPLTG DSQFRRMRSE ESFASQTSAS GEEAQDHAGD GESREHDSAF SAPTSMVTSH 240 SLDSGKADSG EVELELTLGF EPVHHSPXNR SSSSSSSSHS PRRSSGHPAA AAPASSSCRV 300 GVDLDLHLPL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265141.1	3e-98	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-79	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1D1Y825	5e-98	A0A1D1Y825_9ARAE; LOB domain-containing protein 40 (Fragment)
STRING	XP_010265141.1	1e-97	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-74	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Spipo14G0042300