PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0046700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 758aa    MW: 79312.2 Da    PI: 4.6592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0046700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-07235263129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      r+ WT+eEd+ l+ av + G g+W+ I +
  Spipo14G0046700 235 RKLWTKEEDLELIAAVDKCGEGNWANILK 263
                      567**********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.061229287IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-11231277IPR009057Homeodomain-like
SuperFamilySSF466891.22E-8233277IPR009057Homeodomain-like
SMARTSM007170.0042234287IPR001005SANT/Myb domain
PfamPF002495.6E-6235263IPR001005SANT/Myb domain
CDDcd116606.11E-10238277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MEGTKRKKGL LREEDVLLLL NKQFYFSHQK GLDDVNGGVF NTQEYDCYNY AVQLCWIKYS  60
PTTILNLLKE VAQSAGPKLD WDTLVKYSNT GISSAREYQM LWRYLAYKTP VLEKLETGAE  120
PLDDDSDLDY ELEAVPTVTS ETSSDAAACV KALISSGLPH ELVTNRPTAE APLSTNTSNG  180
QASYTLSDKQ LARSDRGGNT MMLSVHRQLQ LAAQSTEMVD GNGTVGVTGP AKKKRKLWTK  240
EEDLELIAAV DKCGEGNWAN ILKGDFKHDR TASQLSQVHF FRISPLLKTV PSEFSSDCLP  300
SDSLCLAHGL LFIVETQTQW ISSARFWLDD SLRWSIIRKK RANLNVGSGS NPPGSAPTEA  360
HMATWQAVNM AIKMPIIGAL STRRPGTTGA LQSTDPAGSS APPAGAGSEP VAISSSEVPN  420
QSPQPSNPAT SQKAVPLNPP SKPRVNPKVP AVAVKPLGGP SSIIQAAAIA AGGRIAPPST  480
AASHFKAAQS KNAVHIRPGG ALPSSSIPAP KAPPPVSIRC TKTPISPKEA ATSPLGSKPS  540
THQGACGSSG QPSPSSDAAA PNQPAEQLQP ELSPASPSCA DAEGNEEPRS AAAGVDSSDG  600
SPQAENKTPE EIISCDQEDP VKSMDTDSDD KINVDQIGDC KGPAKSPEAS DPEMAKAENA  660
GDVAECGDGQ AIGGSPAAAA VAADPETAKS EMPFLNTAGK VDGSGDQVDN SEAVAICNED  720
EMAIDITSGK VDGSGNQVGN SEDVAICNED GNETARG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YD760.0A0A1D1YD76_9ARAE; Telomeric repeat-binding factor 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-41MYB_related family protein