PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo15G0008400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

M-type_MADS

Protein Properties

Length: 67aa MW: 7601.93 Da PI: 12.0327

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo15G0008400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.8	8.1e-30	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s Spipo15G0008400 9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.899	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-28	2	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.24E-33	2	58	No hit	No description
PRINTS	PR00404	1.0E-27	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGR 60 RRLPNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-19	1	59	1	59	MEF2 CHIMERA
6byy_B	1e-19	1	59	1	59	MEF2 CHIMERA
6byy_C	1e-19	1	59	1	59	MEF2 CHIMERA
6byy_D	1e-19	1	59	1	59	MEF2 CHIMERA
6bz1_A	1e-19	1	59	1	59	MEF2 CHIMERA
6bz1_B	1e-19	1	59	1	59	MEF2 CHIMERA
6bz1_C	1e-19	1	59	1	59	MEF2 CHIMERA
6bz1_D	1e-19	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005545	1e-57	AP005545.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0638H11.
GenBank	AP014962	1e-57	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018678753.1	2e-37	PREDICTED: agamous-like MADS-box protein AGL104, partial
Refseq	XP_020580855.1	2e-37	agamous-like MADS-box protein AGL66
Swissprot	Q9LM46	5e-32	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A199VQ62	5e-37	A0A199VQ62_ANACO; Agamous-like MADS-box protein AGL104
TrEMBL	A0A427ADQ5	4e-37	A0A427ADQ5_ENSVE; Uncharacterized protein
TrEMBL	A0A444EB48	2e-37	A0A444EB48_ENSVE; Uncharacterized protein
STRING	GSMUA_Achr3P04450_001	1e-36	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	2e-34	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Spipo15G0008400

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]