PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0009700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 261aa    MW: 27120.2 Da    PI: 5.153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0009700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-2075123355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Spipo15G0009700  75 FRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 123
                      8******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-2374132IPR016177DNA-binding domain
PROSITE profilePS5103222.69574131IPR001471AP2/ERF domain
SMARTSM003802.5E-3674137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-3274132IPR001471AP2/ERF domain
PRINTSPR003676.6E-117586IPR001471AP2/ERF domain
CDDcd000181.59E-3175133No hitNo description
PfamPF008473.9E-1475123IPR001471AP2/ERF domain
PRINTSPR003676.6E-1197113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLPPGECSFL SQLLSAGHGV DHLSAAQLRQ IQTHSAARQA SFLGPRGQPM KHPGAAAAIS  60
TPLVKSGGGG GARLFRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDRAAYK  120
LRGDFARLNF PELRGRCDSL SGDLASGGGG GSGSPLPSAV DAKLQAICES LAASNQPPAT  180
ARSGGGGEEE EEATAAPATA GDEAVGKQEA HLSLSPESGD SSPASEMETL DFSDPAWGES  240
ESMLLGKYPS LEIDWDAILS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1975131663ATERF1
3gcc_A1e-1975131663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123870.11e-65LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-13
TrEMBLA0A3S3NIS51e-64A0A3S3NIS5_9MAGN; Ethylene-responsive transcription factor RAP2-4-like protein
STRINGPOPTR_0005s16690.19e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-38ERF family protein