PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo15G0019800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

ERF

Protein Properties

Length: 125aa MW: 12897.6 Da PI: 6.4871

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo15G0019800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.1	1.5e-15	65	107	9	55
AP2 9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ +g+W+AeIrdp+ r r++lg+f+tae Aa+a++ a+ ++g Spipo15G0019800 65 RP-WGKWAAEIRDPR----RaVRVWLGTFDTAEAAARAYDVAAITFRG 107 45.********82....48********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	21.773	55	115	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-6	59	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.28E-19	64	116	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.4E-26	64	115	IPR001471	AP2/ERF domain
CDD	cd00018	9.02E-17	65	115	No hit	No description
Pfam	PF00847	1.7E-9	65	107	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-26	65	121	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-6	81	97	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MVSALIHVLS GLGSHEQVPV ATAFACAPPD SGGCQFCRIE GCLGCDFFAA GDSGEPTGAG 60 APAARPWGKW AAEIRDPRRA VRVWLGTFDT AEAAARAYDV AAITFRGARA KLNFPFTAET 120 PLSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-18	65	115	21	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120527	2e-35	AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence.
GenBank	AC147812	2e-35	AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence.
GenBank	AP014967	2e-35	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	2e-35	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896704.1	1e-35	ethylene-responsive transcription factor ERF109-like
Refseq	XP_028550689.1	8e-36	ethylene-responsive transcription factor ERF109-like
Swissprot	Q9SZ06	4e-25	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A2R6RH47	5e-36	A0A2R6RH47_ACTCH; Ethylene-responsive transcription factor
STRING	evm.model.supercontig_62.11	4e-35	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1242	36	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	2e-25	redox responsive transcription factor 1

Link Out ? help Back to Top
Phytozome	Spipo15G0019800

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]