PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0027100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB
Protein Properties Length: 156aa    MW: 17847.5 Da    PI: 10.3206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0027100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.5e-181057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v q+G g+W++I+++ g++R++k+c++rw++yl
  Spipo15G0027100 10 KGAWTPEEDILLQRCVLQYGEGQWHLIPERAGLRRCRKSCRLRWLNYL 57
                     79********************************************97 PP
2Myb_DNA-binding47.34.8e-1563107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E +l+v+++++lG++ W++Ia +++ gRt++++k++w++ 
  Spipo15G0027100  63 RGAFQEDEVDLIVRLHRLLGNR-WSLIAGRIP-GRTANDIKNYWNSC 107
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.496161IPR017930Myb domain
SuperFamilySSF466891.61E-278104IPR009057Homeodomain-like
SMARTSM007171.6E-14959IPR001005SANT/Myb domain
PfamPF002497.1E-171057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-221164IPR009057Homeodomain-like
CDDcd001672.93E-101257No hitNo description
PROSITE profilePS5129418.17462112IPR017930Myb domain
SMARTSM007171.6E-1062110IPR001005SANT/Myb domain
PfamPF002498.4E-1463107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2265111IPR009057Homeodomain-like
CDDcd001671.73E-868105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MENQVAKVRK GAWTPEEDIL LQRCVLQYGE GQWHLIPERA GLRRCRKSCR LRWLNYLKPS  60
IKRGAFQEDE VDLIVRLHRL LGNRWSLIAG RIPGRTANDI KNYWNSCLCK KVGAQGKVVR  120
KINNRSTVGL AAETYNSWWE DILLDANPTS GTWSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25101127108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064838.22e-58PREDICTED: transcription factor MYB114 isoform X2
SwissprotQ9FNV91e-53MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1P8DVI52e-59A0A1P8DVI5_ANTAD; MYB2
STRINGXP_010064838.18e-58(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-56myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]