PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0040900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 177aa    MW: 19638.3 Da    PI: 9.7167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0040900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.6e-075880123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++Cg+ F r  nL+ H r+H
  Spipo15G0040900 58 YVCEICGQGFQRDQNLQMHRRRH 80
                     9*********************9 PP
2zf-C2H218.65.1e-06135157123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k +  +s++k H++t+
  Spipo15G0040900 135 WVCGKCSKAYAVQSDYKAHLKTC 157
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-65780No hitNo description
Gene3DG3DSA:3.30.160.607.1E-65780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00325880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6355880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035516099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-5122156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-6130155No hitNo description
SMARTSM0035587135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
SSSVPPQPFA CLDNASTNPT NGGGGVGSKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICGQGFQRD QNLQMHRRRH KVPWKLLKRE TPEVKKRVFV CPEPSCLHHD PCHALGDLVG  120
IKKHYRRKHS NHKQWVCGKC SKAYAVQSDY KAHLKTCGTR GHSCDCGRVF SSSEAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-13132176448Zinc finger protein JACKDAW
5b3h_F1e-13132176448Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026402877.11e-106protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X75e-99IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A1D1ZFR91e-108A0A1D1ZFR9_9ARAE; Zinc finger protein MAGPIE (Fragment)
TrEMBLA0A443PYR61e-108A0A443PYR6_9MAGN; Protein indeterminate-domain-containing protein
STRINGAquca_002_01252.11e-105(Aquilegia coerulea)
STRINGXP_009360028.11e-104(Pyrus x bretschneideri)
STRINGGorai.005G134600.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-100C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]