PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0044400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YA
Protein Properties Length: 228aa    MW: 24908.2 Da    PI: 9.4484
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0044400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-3286142158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d p++VNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  Spipo15G0044400  86 DGPIFVNAKQYHAILRRRQLRAKLEAKNKL-VKGRKPYLHESRHLHAMKRVRGSGGRF 142
                      57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.9E-3684145IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.04285145IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.1E-2488110IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-2788142IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686090110IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.1E-24119142IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MMQSVPLGED NCNSDKVEDH IKSAMLLGTS EVYPVQKTDS FQSVVDIHPM HVCGSILWKW  60
HGWLWATFTG VSAPSRVPLP NELSEDGPIF VNAKQYHAIL RRRQLRAKLE AKNKLVKGRK  120
PYLHESRHLH AMKRVRGSGG RFLKTKQQEQ QAQQQQHAIA AAAAAAAAAT DSEVSSSPLL  180
QLGEKPGSSG SSGAELTGDS NQDAFLPPEP FGFPAEYTSQ QRVSAIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-2188149465NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}.
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917240.12e-42nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_029119417.12e-42nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_029119418.12e-42nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_029119419.12e-42nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_029119420.12e-42nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_029119421.12e-42nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_029119422.11e-42nuclear transcription factor Y subunit A-3 isoform X2
SwissprotQ93ZH26e-36NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
SwissprotQ9SYH45e-36NFYA5_ARATH; Nuclear transcription factor Y subunit A-5
TrEMBLA0A1D1XF436e-60A0A1D1XF43_9ARAE; Nuclear transcription factor Y subunit A-3
STRINGOB03G15670.13e-40(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.15e-38nuclear factor Y, subunit A5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gao W,Liu W,Zhao M,Li WX
    NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis.
    Nucleic Acids Res., 2015. 43(1): p. 607-17
    [PMID:25514924]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  4. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  5. Du Q,Zhao M,Gao W,Sun S,Li WX
    microRNA/microRNA* complementarity is important for the regulation pattern of NFYA5 by miR169 under dehydration shock in Arabidopsis.
    Plant J., 2017. 91(1): p. 22-33
    [PMID:28332758]
  6. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]