PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0005500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRF
Protein Properties Length: 208aa    MW: 21766.6 Da    PI: 9.3663
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0005500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.82.5e-25109153145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+ v++++k+CErH+hrgr+rsrk+ e+
  Spipo16G0005500 109 DPEPGRCRRTDGKKWRCSKAVVPNHKYCERHMHRGRHRSRKPAED 153
                      79***************************************9887 PP
2QLQ51.53.1e-183773137
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     saFT  Qlq+L++Q+l+++++aa++PvP +L+++i+k
  Spipo16G0005500 37 SAFTFLQLQELEHQALIFQHMAAGVPVPLQLVLPIWK 73
                     79*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-73773IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.3643873IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-123872IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.709109153IPR014977WRC domain
PfamPF088795.1E-21110151IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
LSPLVVHAYA CSQAARYSSP VPTDHGLGLA LGGGGKSAFT FLQLQELEHQ ALIFQHMAAG  60
VPVPLQLVLP IWKSVAGSSP FASHHSLPSF MGCVSGSGGL CFDYGSSVDP EPGRCRRTDG  120
KKWRCSKAVV PNHKYCERHM HRGRHRSRKP AEDGAAAAFP ASNPPVAEAV ATSAATLSIG  180
FRSEFHHAGA GSSVSGGSNS PPRLGFSP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026379112.12e-57growth-regulating factor 10-like
SwissprotQ6AWX72e-52GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLM0TPQ91e-56M0TPQ9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P12060_0012e-57(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.19e-34growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]