PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo16G0005800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

LBD

Protein Properties

Length: 234aa MW: 24287.6 Da PI: 6.8759

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo16G0005800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	4.8e-39	32	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf + q +++f +vhk+FGasnv+kll+ +p+ +r da+ +++yeA+ r+rdPvyG+vg il+lqqq+++l+ae Spipo16G0005800 32 PCGACKFLRRKCVSGCIFAPYFNSVQgAAHFSAVHKVFGASNVSKLLRLIPPYKRLDAVVTICYEAQLRIRDPVYGCVGRILALQQQVANLQAE 125 7*********************9879************************************************************** PP DUF260 94 lallkee 100 l+ l+++ Spipo16G0005800 126 LSCLQTH 132 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.206	31	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-39	32	130	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
SVGIGSPPCG SGSGGGGGGG GGVGGGGGGG GPCGACKFLR RKCVSGCIFA PYFNSVQGAA 60 HFSAVHKVFG ASNVSKLLRL IPPYKRLDAV VTICYEAQLR IRDPVYGCVG RILALQQQVA 120 NLQAELSCLQ THLAPQEPPP VTHAPPSQAS PAAFFTPELP LASLLPGTFD LSTLFDPPLL 180 LPWPPPLQQQ QLDLRQLGRN GGGELTDNNQ DGGDMQDLAR ELMERYSSAS AEQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-38	28	133	7	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-38	28	133	7	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276364.1	5e-75	PREDICTED: LOB domain-containing protein 30-like
Swissprot	O81323	7e-57	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A1U8BHE7	1e-73	A0A1U8BHE7_NELNU; LOB domain-containing protein 30-like
STRING	XP_010276364.1	2e-74	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	2e-45	LBD family protein

Link Out ? help Back to Top
Phytozome	Spipo16G0005800

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]