PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0011000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SRS
Protein Properties Length: 841aa    MW: 90937.9 Da    PI: 6.8509
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0011000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70294.52.2e-293891457
           DUF702  4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla 57
                     g++sC+dCGnqakkdC+++RCRtCC+srgf+C th+kstWvpaakrr+r + + 
  Spipo16G0011000 38 GAVSCRDCGNQAKKDCMYTRCRTCCRSRGFQCPTHIKSTWVPAAKRRQRAAVKL 91
                     6789********************************************976654 PP
2DUF70279.49.4e-25105156102154
           DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++P+e++seavfrcvrvs+vd++ e++aYqt+v+igGhvfkGiLydqG++ 
  Spipo16G0011000 105 ARNFPPELNSEAVFRCVRVSAVDEA-EQYAYQTTVNIGGHVFKGILYDQGPDP 156
                      567*******************987.68**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.3E-4739155IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-254183IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-26108154IPR006511Lateral Root Primordium type 1, C-terminal
Gene3DG3DSA:3.30.420.404.0E-22343574No hitNo description
PfamPF003707.6E-8345575IPR018484Carbohydrate kinase, FGGY, N-terminal
SuperFamilySSF530677.31E-28345574No hitNo description
Gene3DG3DSA:3.30.420.406.5E-7582750No hitNo description
SuperFamilySSF530673.89E-17582750No hitNo description
PfamPF027827.1E-7647750IPR018485Carbohydrate kinase, FGGY, C-terminal
PfamPF097919.8E-14790827IPR019180Oxidoreductase-like, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009507Cellular Componentchloroplast
GO:0016773Molecular Functionphosphotransferase activity, alcohol group as acceptor
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAGEGNRLPE ELVTYTKGFE LWQQHHLLED GGASSSGGAV SCRDCGNQAK KDCMYTRCRT  60
CCRSRGFQCP THIKSTWVPA AKRRQRAAVK LSKRPREIGG GIEAARNFPP ELNSEAVFRC  120
VRVSAVDEAE QYAYQTTVNI GGHVFKGILY DQGPDPQAAS SSTPAVSLAA ATATAPGSVA  180
MFDQSSLYAT PLSALMAVLL FNTKEKDGKN NAIGSSQQHQ LAKLQPSPSA VATESVELTS  240
FSNITKQNRH GFSEKLVGDD LPLSVQQTKT LFSVPPSTDY ARAAEFLIFP VCPASAWRIS  300
MKIQQLQAEI LRFKVYRADV GYPSAAAWAG RKHVDDMREK GSARLYLGMD FGTSGARYVL  360
VDERGAVHSE GRKGYPPLSL DQNGRSWASS WRETLEALLG EIPRDVCSRV ASISIDGTSA  420
TTLIIDSATG ELLWRPLLYN ESCPEALERV AAMAPENHTV RSGSSTLCKL VAWWDAYDQN  480
KETAVLLHQA DWLLWLLHGR LGVTDYNNAL KVGYDPGADS YPPWLRSQPF SRMLPSVQAP  540
GTPIGFVKDH IRLQYGFPED CRVCTGTTDS IAAFLAARAA VPGQAVTSLG STLAVKLLSS  600
CRVEDARFGV YSHRLDDLWL VGGASNTGGA VLRQIFTDQE LEQLSSKIDP STPSPLDFYP  660
LPATGERFPV ADPSMAPSDV EYLHGILESI ARIEAKGYRL LMDLGATRVD QVLTSGGGAK  720
NAAWMKIRQR VLGLPVVPAM NTEAASLGYA GRRKEWIGGS GGAAVAAEKK REGEAAAQEA  780
PNSPAVAPPL PPPPEEPLPG DCCGSGCVRC VWDVYYEELE AYNKLAAERT PETKTTAENR  840
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5htr_A0.034474515422Putative xylulose kinase
5htv_A0.034474515422Putative xylulose kinase
5htx_A0.034474515422Putative xylulose kinase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512973.20.0D-ribulose kinase isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-45SHI-related sequence 5