PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo16G0012200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

GRAS

Protein Properties

Length: 730aa MW: 76047.6 Da PI: 5.8111

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo16G0012200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	263.7	6.2e-81	369	728	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 lv++L+++Ae+v++g+++ a+ +Larl+++ s++g+p+ R a+y +eAL++ + + + +p +++ +++ +l+a+k fsevsP+l+f+ Spipo16G0012200 369 LVDQLFKAAEMVEAGNFTSARGILARLNHQLSQNGKPLVRSAFYCMEALQSIVGGAAAPG--SSSPALSTPLDVVLKLSAYKSFSEVSPVLQFA 460 6899***********************************************9933333..33455555567***************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 ++t+ qa+le+++g++r+Hi+Df+++ G+QW +++q+La+R+ +gppslRiT+++sp+ ++ +++ e+L++fA el++pfe+++ Spipo16G0012200 461 NFTCAQALLEELSGCDRIHIVDFEVGVGGQWSSFMQELAQRRggggaaAGPPSLRITVFASPQ--PITRSSSLSENLSNFAGELNIPFEISI-- 550 **************************************66555555*******88..899999****************9.. PP GRAS 183 akrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsl 271 +++e++++ ++ v+++Ea+aVnl +l s++ ++L+lvk+l P++vv v++ a ++ ++ r++++l+ ++l+ds+ Spipo16G0012200 551 -QSIESVDPGSFleMVRRDEAVAVNLPASLGPSS----STPA---SLLRLVKQLAPRIVVSVDHGAAAaaaSDLPLPGRLFHTLQSGAVLLDSI 636 .78999999887656778******877665....4444...79*************96552236679*************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 +a + + ++++k+ + l++++i+++v ++++ + + +aGF+p++ls++a++qa++ll++ ++ g++ve+++++l+l+W++ Spipo16G0012200 637 AAA-GVHPDAMNKMGHYLVKPRIESAVVGRHRA-----A-----SGDFAAAGFSPAALSSFAETQADCLLKRLQVSGFHVEKNQAALTLCWRRA 719 666.4577999************987776.....2.....4679****************************************** PP GRAS 366 pLvsvSaWr 374 +L+sv aWr Spipo16G0012200 720 ELISVAAWR 728 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.173	343	708	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-78	369	728	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MRGTPFNLQG EEVLWKSTAA VGAPGSADSG DSVGTGKKER TEPRSVLDHR RSPSPPTSAS 60 TGGGSADSAG VAAVSDNPGR KWSPTTSLIA APDEAPGRRD EWAAAELLPI PTGLEIAALD 120 WDAMLCETAP PPPGHDQTSF LRFMMGEVDG FSAGAPKQRH HHHHQMLSQQ AAAEFEVGGG 180 DAAGGGAGIV DPVLGFENYP GMGLPGSMAA YPLSSSASYG SFGGFSTTKG DGETRFQPMS 240 PANSAHLRVP WFGANANPSP LSSPSPSPSP ASSFPFPLSL PPGGGFFTEP ATEEKLHLFG 300 PGLLLNQQQL QQSPPPPPLQ CAAFFPPLQP PFQEDMESSQ GPPGFHNLLQ IPTKSRSSPA 360 EEAATAAALV DQLFKAAEMV EAGNFTSARG ILARLNHQLS QNGKPLVRSA FYCMEALQSI 420 VGGAAAPGSS SPALSTPLDV VLKLSAYKSF SEVSPVLQFA NFTCAQALLE ELSGCDRIHI 480 VDFEVGVGGQ WSSFMQELAQ RRGGGGAAAG PPSLRITVFA SPQPITRSSS LSENLSNFAG 540 ELNIPFEISI QSIESVDPGS FLEMVRRDEA VAVNLPASLG PSSSTPASLL RLVKQLAPRI 600 VVSVDHGAAA AAASDLPLPG RLFHTLQSGA VLLDSIAAAG VHPDAMNKMG HYLVKPRIES 660 AVVGRHRAAS GDFAAAGFSP AALSSFAETQ ADCLLKRLQV SGFHVEKNQA ALTLCWRRAE 720 LISVAAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MRGTPFNLQG EEVLWKSTAA VGAPGSADSG DSVGTGKKER TEPRSVLDHR RSPSPPTSAS  60
TGGGSADSAG VAAVSDNPGR KWSPTTSLIA APDEAPGRRD EWAAAELLPI PTGLEIAALD  120
WDAMLCETAP PPPGHDQTSF LRFMMGEVDG FSAGAPKQRH HHHHQMLSQQ AAAEFEVGGG  180
DAAGGGAGIV DPVLGFENYP GMGLPGSMAA YPLSSSASYG SFGGFSTTKG DGETRFQPMS  240
PANSAHLRVP WFGANANPSP LSSPSPSPSP ASSFPFPLSL PPGGGFFTEP ATEEKLHLFG  300
PGLLLNQQQL QQSPPPPPLQ CAAFFPPLQP PFQEDMESSQ GPPGFHNLLQ IPTKSRSSPA  360
EEAATAAALV DQLFKAAEMV EAGNFTSARG ILARLNHQLS QNGKPLVRSA FYCMEALQSI  420
VGGAAAPGSS SPALSTPLDV VLKLSAYKSF SEVSPVLQFA NFTCAQALLE ELSGCDRIHI  480
VDFEVGVGGQ WSSFMQELAQ RRGGGGAAAG PPSLRITVFA SPQPITRSSS LSENLSNFAG  540
ELNIPFEISI QSIESVDPGS FLEMVRRDEA VAVNLPASLG PSSSTPASLL RLVKQLAPRI  600
VVSVDHGAAA AAASDLPLPG RLFHTLQSGA VLLDSIAAAG VHPDAMNKMG HYLVKPRIES  660
AVVGRHRAAS GDFAAAGFSP AALSSFAETQ ADCLLKRLQV SGFHVEKNQA ALTLCWRRAE  720
LISVAAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-27	375	727	24	377	Protein SCARECROW
5b3h_D	2e-27	375	727	24	377	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018686265.1	1e-153	PREDICTED: scarecrow-like protein 27
Refseq	XP_018686266.1	1e-153	PREDICTED: scarecrow-like protein 27
Refseq	XP_018686267.1	1e-153	PREDICTED: scarecrow-like protein 27
Refseq	XP_018686268.1	1e-153	PREDICTED: scarecrow-like protein 27
STRING	XP_010258971.1	1e-150	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	9e-77	GRAS family protein

Link Out ? help Back to Top
Phytozome	Spipo16G0012200