PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0022200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 589aa    MW: 63711.8 Da    PI: 7.9709
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0022200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59.3e-11436494563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l +l+  +a l +++
  Spipo16G0022200 436 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTMLQRDSAGLANQN 494
                      9***********************************************99999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.6E-18432496IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875434497IPR004827Basic-leucine zipper domain
PfamPF001702.6E-9436494IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.3E-11436487No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-11436493No hitNo description
CDDcd147034.76E-24437488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MQRLQSSVTA SSSSQSGDYQ QLSQQLLGNR FDAGQVRLPG EPLRDFHHAG FGGQRSHGAG  60
SVLNNSSGGG NFTSAVNNKR PAGIPPSRPH IPPASPYSQI PSPSSGSPGQ QSYGHGPSHA  120
RSLSQPATFF SLDSLPPLSP SPYRESPSAG TFSDSSSVDL PMEDRDINSQ TGVQLPGRFS  180
RPNSDRAADS VPPRKAHRRS HSEVPFGFFQ SSFSAAVPNP SQRPQGMMEF SASPGGNMES  240
GGSKQSVKKE PVWDRNVGNS TAGTARKPEG DADDDLINSY MNLDRFDALI ASRNDDRCDE  300
AKTNGAESSE NETESSVNES DSSLQQLKEG GNPSAEKREG VKRRAIDDPG QNPNSSRHSR  360
SISMDSFMDK INFADDSPNL SPSPVIKAGQ HSRNSSLDES GKSFDFELGN GEFSGAELKK  420
IMANERLAEI ASSDPKRAKR ILANRQSAAR SKERKMRYIS ELEHKVQTLQ TEATTLSAQL  480
TMLQRDSAGL ANQNNELKFR LQAMEQQAHL RDALNEALTV EVRRLKIANR ELAEGNSSAN  540
VAQHLPTNPR LFPPPQQPPP PPGQLRHQNQ PLQENSSPSK REASHPIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471421.11e-170uncharacterized protein LOC102624958
RefseqXP_006487269.11e-170uncharacterized protein LOC102620948
RefseqXP_006493636.11e-170uncharacterized protein LOC102613352
TrEMBLA0A1D1XV280.0A0A1D1XV28_9ARAE; Transcription factor RF2a
STRINGXP_006471421.11e-169(Citrus sinensis)
STRINGXP_006487269.11e-169(Citrus sinensis)
STRINGXP_006493636.11e-169(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.34e-91bZIP family protein