PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0022800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 201aa    MW: 22141 Da    PI: 7.1672
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0022800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000282444323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     Cp+C+k F ++   + H+r +
  Spipo16G0022800 24 CPHCSKEFASPKARNGHMRWC 44
                     ******************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSTRKAAASR RRPAARPTSA SKICPHCSKE FASPKARNGH MRWCDREPGA ADSEPPLKKL  60
AAPVREDEFD QEEHRVAALL LLLRGDKSQK IFSQCNNEFL SPKARNGHMG WCSRGLPQAA  120
ADPPLRKRAA PVREDEFDEE EHRVVASLLL LQGDQSDEMA SFSDATAGGV LMDLNMTTPE  180
EKAEGLERLT YSSHVVHLLV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916RRRPAARP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-