PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo16G0025000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

WOX

Protein Properties

Length: 165aa MW: 18750.4 Da PI: 10.2952

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo16G0025000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.6e-21	80	140	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql +Le+ F++ n ps+++ +e+A++l +++e++V++WFqNrRa+ k+ Spipo16G0025000 80 RQRWSPTPGQLLVLESIFNQgNVAPSKQKVKEIASELasrgQISETNVYNWFQNRRARLKR 140 89***************99***********************************997 PP
2	Wus_type_Homeobox	88.7	5.9e-29	79	141	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+Ptp Q+ +Le+++++G + P+k+++++i++eL++ G+i+++NV++WFQNr+aR +++ Spipo16G0025000 79 SRQRWSPTPGQLLVLESIFNQGNVAPSKQKVKEIASELASRGQISETNVYNWFQNRRARLKRR 141 689********************************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-16	73	147	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.467	76	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.97E-18	78	146	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-11	78	145	IPR001356	Homeobox domain
CDD	cd00086	4.46E-12	80	142	No hit	No description
Pfam	PF00046	1.9E-18	80	140	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MAEGVFHFRV MTDEQMEVLR KQISVYATIC QQLVEMHKAI YALPVDYSLL AVHVSISGTC 60 PRNPHYDSSA APGGHKMASR QRWSPTPGQL LVLESIFNQG NVAPSKQKVK EIASELASRG 120 QISETNVYNW FQNRRARLKR RHPTAMRSNV ESEVETQRKE QRNR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940220.2	1e-58	WUSCHEL-related homeobox 8 isoform X2
Swissprot	Q5QMM3	2e-53	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2H3ZE14	1e-56	A0A2H3ZE14_PHODC; WUSCHEL-related homeobox 8-like
STRING	XP_008812362.1	2e-57	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-45	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Spipo16G0025000

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]