PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0027200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 415aa    MW: 45127.8 Da    PI: 9.2062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0027200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-053557123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Spipo16G0027200 35 FICEVCNKGFQRDQNLRLHRRGH 57
                     89*******************88 PP
2zf-C2H215.26.3e-05111133123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++   s+Lk H +t+
  Spipo16G0027200 111 WKCEKCSKRYAVLSDLKAHSKTC 133
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.4E-63457IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.74E-83457No hitNo description
PROSITE profilePS5015710.9283557IPR007087Zinc finger, C2H2
SMARTSM003550.0333557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SMARTSM0035515076106IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-699132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.74E-8106131No hitNo description
SMARTSM0035577111131IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MPSLRNTASN AACVTDPDAE VIALSPKTLM ATNRFICEVC NKGFQRDQNL RLHRRGHNLP  60
WSLRQKGTGE VKQRVYLCPE PTCVHHDPSR ALGDLTGIKK HYFRKHGEKK WKCEKCSKRY  120
AVLSDLKAHS KTCGTREYRC GCGTVFSRRD SFITHRAFCD ALAQESAHFS ANLSAIKSEI  180
YGTGGSSAPF FLGRTNQNIR GLQLHHSMLP EKPFHGLVQL PEPQYINNTS SPSSSSAAAS  240
SASSMFNLSF VSQNRTHSGG QNSHLLQTSD HPGSLYRPIQ QSNFMLPQIS ETGLFHNTDQ  300
MGATASSSGS LFRGIEGSYS SGTVHDARLR DLMNSLANGN VGVDLMACGG ESEAFRRVCT  360
GGGRVEEGGL MGGDEPKLQQ GLPMESISGS SGFTRDFLGI GSMAFPSQRL GMKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-31107171367Zinc finger protein JACKDAW
5b3h_F4e-31107171367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017696127.11e-122protein indeterminate-domain 5, chloroplastic-like
RefseqXP_017696128.11e-122protein indeterminate-domain 5, chloroplastic-like
RefseqXP_026656993.11e-122protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A1D1XPR51e-129A0A1D1XPR5_9ARAE; Zinc finger protein MAGPIE
STRINGXP_010270754.11e-119(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-100indeterminate(ID)-domain 4