PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo16G0039300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

TCP

Protein Properties

Length: 179aa MW: 18814.8 Da PI: 8.754

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo16G0039300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.1	1.5e-34	58	130	6	77
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 ++++++hTkv+gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg++ +a ++ ++ s Spipo16G0039300 58 STSKDRHTKVNGRGRRVRMPAMTAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGVAPAAATtTTCS 130 578*********************************************************8888844422222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-29	59	133	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.69	60	114	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MDSQLALYSS SAATTTAAAT GGAAASAAES PAPALFHPQR PRPSTGAGAG RRLSISSSTS 60 KDRHTKVNGR GRRVRMPAMT AARIFQLTRE LGHRSDGETI EWLLRQAEPS IIAATGSGVA 120 PAAATTTTCS DSSPPPGGGA FHRVPYYTSM LMCPPAGDDE QGDQQEPRWA EEQQRRPPE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581062.1	6e-39	transcription factor PCF1
Swissprot	O23875	8e-38	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A0E0KN28	6e-39	A0A0E0KN28_ORYPU; Uncharacterized protein
STRING	OPUNC04G03490.1	1e-39	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	8e-28	TCP family protein

Link Out ? help Back to Top
Phytozome	Spipo16G0039300