PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0056400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Whirly
Protein Properties Length: 136aa    MW: 15057.4 Da    PI: 9.8732
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0056400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly146.11.3e-45221311110
           Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 
                      s++k+kaal v +v+p+f+ +dsgn ++k++G++ll++++a+++rkyd ek+q fals+tev+ l++l+++esceffhdp++k+s+eG+v+k+l
  Spipo16G0056400  22 SIFKGKAALIVSPVLPKFSMMDSGNSVVKKKGSVLLKFMPAVGTRKYDPEKRQLFALSPTEVGCLISLGPEESCEFFHDPSMKSSQEGEVKKSL 115
                      79******************************************************************************************** PP

           Whirly  95 kvePlpdGsGlfvnls 110
                       v P ++  G+f+ ls
  Spipo16G0056400 116 TVSPTSNDGGYFFTLS 131
                      *************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.2E-4613132IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.12E-4216132IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.3E-4323131IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
VSEWIFNLGA QSRWRRTFAD FSIFKGKAAL IVSPVLPKFS MMDSGNSVVK KKGSVLLKFM  60
PAVGTRKYDP EKRQLFALSP TEVGCLISLG PEESCEFFHD PSMKSSQEGE VKKSLTVSPT  120
SNDGGYFFTL SKHPIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A8e-481613110125Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B8e-481613110125Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C8e-481613110125Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D8e-481613110125Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803798.14e-58single-stranded DNA-binding protein WHY2, mitochondrial-like
SwissprotQ8VYF76e-47WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1D1ZK832e-60A0A1D1ZK83_9ARAE; Anthranilate synthase component I-2, chloroplastic
STRINGXP_008803798.12e-57(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-42WHIRLY 2