PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0001300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family LSD
Protein Properties Length: 147aa    MW: 15112.7 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0001300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.75e-152953125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP+GA+sV+Ca+C++V
  Spipo17G0001300 29 CSGCRNLLMYPLGATSVCCAVCNAV 53
                     ************************9 PP
2zf-LSD146.56e-156892125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     CggC+tlL+Y rGA+sV+C++C+t+
  Spipo17G0001300 68 CGGCHTLLMYIRGATSVQCSCCHTI 92
                     ***********************97 PP
3zf-LSD135.41.7e-11106130125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C  V
  Spipo17G0001300 106 CGNCRMLLMYQYGARSVKCAVCSYV 130
                      **********************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.2E-142656IPR005735Zinc finger, LSD1-type
PfamPF069434.6E-122953IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.77E-529127IPR011031Multihaem cytochrome
TIGRFAMsTIGR010536.3E-146594IPR005735Zinc finger, LSD1-type
PfamPF069439.9E-136892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-10103131IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-11106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPAPFTPP NGAQSQLVCS GCRNLLMYPL GATSVCCAVC NAVTAVPPPG  60
TEMAQLLCGG CHTLLMYIRG ATSVQCSCCH TINLALEANQ VAHVSCGNCR MLLMYQYGAR  120
SVKCAVCSYV TPIGAAPSAA DQKFSS*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269986.16e-89PREDICTED: protein LSD1
RefseqXP_010269987.16e-89PREDICTED: protein LSD1
RefseqXP_010269988.16e-89PREDICTED: protein LSD1
SwissprotQ93ZB12e-76LOL1_ARATH; Protein LOL1
TrEMBLA0A1U8AU491e-87A0A1U8AU49_NELNU; protein LSD1
STRINGXP_010269986.12e-88(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-62lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]