PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0004500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB
Protein Properties Length: 281aa    MW: 32159.5 Da    PI: 7.3767
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0004500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.5e-151057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd ll ++v q+G g+W++I+++ g++R++k+c +rw++yl
  Spipo17G0004500 10 KGAWVPEEDALLQRCVLQYGEGQWHLIPERAGLRRCRKSCHLRWLNYL 57
                     799*******************************************97 PP
2Myb_DNA-binding45.32e-1463107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E +l+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Spipo17G0004500  63 RGAFQEDEVDLIIRLHRLLGNR-WSLIAGRIP-GRTANDIKNYWNSC 107
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.915157IPR017930Myb domain
SuperFamilySSF466892.98E-258104IPR009057Homeodomain-like
SMARTSM007171.6E-12959IPR001005SANT/Myb domain
PfamPF002491.5E-131057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-201164IPR009057Homeodomain-like
CDDcd001673.02E-81257No hitNo description
PROSITE profilePS5129422.91458112IPR017930Myb domain
SMARTSM007179.6E-1162110IPR001005SANT/Myb domain
PfamPF002491.8E-1363107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2265111IPR009057Homeodomain-like
CDDcd001671.93E-868105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENHVAKVRK GAWVPEEDAL LQRCVLQYGE GQWHLIPERA GLRRCRKSCH LRWLNYLKPS  60
IKRGAFQEDE VDLIIRLHRL LGNRWSLIAG RIPGRTANDI KNYWNSCLCK KVGAQGKVAR  120
NINKRSTVGL AAETYNSCIW GRATLSPRIA HSPEAILGCR HEIFRPRPRT MSDGPICLPD  180
IITCREPFPG RQCCSSTDER PDNEQELMAW TRLLLEDDGK DQGHRQQEER EDKDAISFPV  240
EEELRQWPPQ KDDEVEGSWW PLGWEDILLD ANPTSGTFSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22101127108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139536.12e-55hypothetical protein PHAVU_008G038200g
RefseqXP_017239292.13e-55PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV92e-51MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1P8DVI51e-72A0A1P8DVI5_ANTAD; MYB2
STRINGXP_007139536.19e-55(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-54myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]