PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo17G0012400

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 214aa MW: 22247.7 Da PI: 8.0803

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo17G0012400	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.9	6.6e-07	94	138	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + r RR+ri ++ eL +l+P ++++ ae+L A +Y+k Lq Spipo17G0012400 94 SVAARLRRRRISEKTRELAQLIPGG-----PRMTTAEMLLAARNYVKFLQ 138 667799***************95.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.551	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-10	88	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.02E-7	89	136	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-7	92	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-9	94	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MAVSLRTDWV PMQAPPSKAA TAAGAHGQPF HGDLLPHTFS DFPFLDDFLF DEALLGLLLD 60 DPPPPPALLP GSLAGATARP AVAPPTSACP TAQSVAARLR RRRISEKTRE LAQLIPGGPR 120 MTTAEMLLAA RNYVKFLQAQ LGLLGLAGSS SPGSPAEELT RRLVASPAVQ EKLAGVEKCL 180 FPCGAVEAMR ADPEIGSRPF ILRGLGGLTS PAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020268269.1	3e-33	transcription factor bHLH53-like
TrEMBL	B9I0X7	6e-31	B9I0X7_POPTR; Uncharacterized protein
STRING	POPTR_0011s16100.1	1e-31	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6201	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	2e-15	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo17G0012400