PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0013100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family SRS
Protein Properties Length: 334aa    MW: 34538.4 Da    PI: 8.1838
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0013100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.22.5e-691042653154
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel..kskkqsal 86 
                       g++sCqdCGnqakkdC+h+RCRtCCksrgf+C thvkstWvpaakrrerqqqlaaa++++++            ++skr+re+    + +   
  Spipo17G0013100 104 GGGMSCQDCGNQAKKDCMHMRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQQLAAAMQHQQQLVvrgsgsgsGGEHSKRPREMvgGLACTRVP 197
                      5789****************************************************99988776688988877777888888873312222223 PP

           DUF702  87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      +++ ++s++s     + ++P+evss+avfrcvrvs+vd++e+++aYqtavsi+GhvfkGiLydqG+++
  Spipo17G0013100 198 ATMATTSTTSGGLEAAVTFPSEVSSPAVFRCVRVSAVDEAEDQYAYQTAVSIAGHVFKGILYDQGPDS 265
                      333334444444445556************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-68106264IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.7E-28108150IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.3E-27216263IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGFTLGGGG GSAQNQAPGD QIPTDNLFLY TSGGGGGRHT QEIPSYTKGF ELWQHHHQQL  60
QQQQRPQHHH LYAAGLGMML DDPAGAVAGS SGGGSSRGTK TGSGGGMSCQ DCGNQAKKDC  120
MHMRCRTCCK SRGFQCPTHV KSTWVPAAKR RERQQQLAAA MQHQQQLVVR GSGSGSGGEH  180
SKRPREMVGG LACTRVPATM ATTSTTSGGL EAAVTFPSEV SSPAVFRCVR VSAVDEAEDQ  240
YAYQTAVSIA GHVFKGILYD QGPDSHYSHP GDESSSSAVA AAAITTTGAA ATSITTAVAA  300
AAAASSMLDP ASLYPAPLSA FMAGTHFFSH PRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400794.11e-100PREDICTED: protein SHI RELATED SEQUENCE 1-like
RefseqXP_009400795.11e-100PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A1U8AXS24e-97A0A1U8AXS2_NELNU; protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A444F4S97e-97A0A444F4S9_ENSVE; Uncharacterized protein
STRINGXP_010271515.16e-98(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-60SHI-related sequence 5