PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0016600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HSF
Protein Properties Length: 281aa    MW: 30213.6 Da    PI: 5.7921
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0016600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35191092101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++isw+e+g++f+v+ + efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll+
  Spipo17G0016600  19 FLTKTYQLVDDPAVDNVISWNEDGSTFIVWRPPEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVVADR---------WEFANECFRRGEKKLLC 103
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Spipo17G0016600 104 DIHRRK 109
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-5715108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.02E-3416108IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.4E-3817108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-201942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.7E-3219108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-205769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAAPAEQAPE LAAGLPTPFL TKTYQLVDDP AVDNVISWNE DGSTFIVWRP PEFARDLLPK  60
FFKHNNFSSF VRQLNTYGFR KVVADRWEFA NECFRRGEKK LLCDIHRRKV LLPPPTGRAV  120
ATAATASSPA DSGEEPVASS NSSPGNGGGG PAAADLAEEN HRLRRENEKL SRELSYLQSL  180
CDDILCLMSS YAAQKPEQRR RPENGSTRLA GESDAAGSSR EGRVKSEDHE GDNPRLFGVP  240
IGAKRARGCP SADEENPEPA DPGGAAAAGG GGFPLPTQRV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251910829129Heat shock factor protein 1
5d5v_B1e-251910829129Heat shock factor protein 1
5d5v_D1e-251910829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933854.12e-96heat stress transcription factor B-2c
SwissprotQ652B03e-77HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A200QUM82e-95A0A200QUM8_9MAGN; Heat shock factor (HSF)-type
STRINGXP_008790507.16e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-66heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]