PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0023200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 191aa    MW: 20361.7 Da    PI: 6.5488
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0023200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-184190356
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++ge
  Spipo17G0023200 41 YRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKGE 90
                     9****998.**********843...6***********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-3740103IPR001471AP2/ERF domain
PROSITE profilePS5103223.1034097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-324098IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-224098IPR016177DNA-binding domain
PfamPF008471.3E-124190IPR001471AP2/ERF domain
CDDcd000183.54E-304199No hitNo description
PRINTSPR003676.0E-114152IPR001471AP2/ERF domain
PRINTSPR003676.0E-116379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEEAVDGDGA AASPAAETTS SSSGSTAADG GAKGEKRRNL YRGVRMRNWG KWVSEIREPR  60
KKSRIWLGTF PTAEMAARAH DVAALTIKGE AAHLNFPELA SELPRPATAA PKDIQAAAAK  120
AAAATFVGRQ VEAEQRCRRE DPGSPGDDEL FDLPNILVGV SSGDWKNPSQ TVFYKNNYQF  180
DGPPDPIPKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1741981573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401144.11e-53PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9M0802e-44ERF43_ARATH; Ethylene-responsive transcription factor ERF043
SwissprotQ9SUK82e-44ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A444E0E65e-51A0A444E0E6_ENSVE; Uncharacterized protein
STRINGXP_010264388.12e-48(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]