PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0023400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 197aa    MW: 21773.8 Da    PI: 10.3682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0023400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13137188155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+ +N+ +  Lr+l+P++     ++ + a+i+  A++++k+L+
  Spipo17G0023400 137 QRMTHIAVERNRRRLMNDHLTSLRSLMPPS---FVQRGDQASIVGGAIDFVKELE 188
                      79***************************9...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.5E-13135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-12135192No hitNo description
PROSITE profilePS5088814.939136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14136195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MASHHHLQMP FLHMLLEEQD RRAAPPEPGA FQLLLRLQEE RLRRLPVHHP PPPPPWGGEE  60
WPAGAEPWCR ELDSCVTHTS ESMSKQEPSG TAAAAAAKTV ATGGAAAAGK REGAAAAKRK  120
RKRLRRTARN VEEVESQRMT HIAVERNRRR LMNDHLTSLR SLMPPSFVQR GDQASIVGGA  180
IDFVKELEQL LQSLQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125KRKRKRLRR
2137148RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767229.18e-42transcription factor bHLH57-like isoform X2
RefseqXP_021767230.18e-42transcription factor bHLH57-like isoform X2
TrEMBLA0A1D1YAK54e-46A0A1D1YAK5_9ARAE; Transcription factor bHLH57 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-34bHLH family protein