PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo17G0032300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Nin-like

Protein Properties

Length: 772aa MW: 84502.1 Da PI: 6.2798

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo17G0032300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.6e-28	460	510	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l+++Fs+++k+AAk Lgvc+T+LKriCRq+GI RWP Rkik++ Spipo17G0032300 460 EKTISLEVLRQHFSGSLKEAAKVLGVCPTTLKRICRQHGITRWPARKIKKV 510 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.938	445	530	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-25	462	510	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.14E-20	663	745	No hit	No description
PROSITE profile	PS51745	21.945	663	746	IPR000270	PB1 domain
SMART	SM00666	4.2E-23	663	746	IPR000270	PB1 domain
Pfam	PF00564	1.7E-15	665	745	IPR000270	PB1 domain
CDD	cd06407	2.48E-38	665	745	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-20	665	745	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence Send to blast
MEDDLFLLDS GDLFLPEDVW LGNLDLPEQV PPSATSPAQA ESRALCPRTG AGSGLGSSLR 60 EKLSRALGWI RDSYRDCEVL IQVWVPTEGA EGLVLTTSSE PFALAPGCER LLNYRAVSTC 120 FQFSAGENSG GALGLPGRVF QGKLPEWSPD VRYFSNYEYP RVNYAQQCDV RGSLALPVFH 180 HHRGGGGGRL SCLGVIEVVM TTERINYRSD YEHICSALQA VDLSSSEALN APRVEVRSDF 240 QLAGLPEIAA ALRASCRAHG FALAQAWIPC ARQGRSGSRH SDGNYEDCIS TVDALCCVND 300 PALAGFHEAC SEHHLLRGQG IVGKAFLMNR PWFSSDITAP CKTEYPLSHH ARMLGLGAAA 360 AVCLHRGAAT GKAEIVLEFI LPKECRRSEE QAAMVNAMLV TVRQACPSWH VLAERQLEEE 420 GLLQVNPQPA SASSENAQES GYYSSPAGDK AKGSKLTKTE KTISLEVLRQ HFSGSLKEAA 480 KVLGVCPTTL KRICRQHGIT RWPARKIKKV GHSLKKLQVV IDSVQGIDGA VHLSSLYDDV 540 RRAPGLVEQE AGKKNVITSL YRSDDQELPS TSNPLSSSCT SGSSRGCSIG REGSSHVPDG 600 PSEEAPFVEE NGGTTWRFSD ELERDYPTEG IPATRDQLQT SGSLGDHSDL KTPFQNKHAA 660 RGLPRVKATH GEEKIRFSLK PNWGVHEVMQ EISKRFNISD MNSVDLRYLD DESEWVLLRC 720 DDDLQVCADL YRTSRIHTIK ISVHHADRPS FMPFGSEDYD LLGYIPRPFT E*

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence Send to blast

MEDDLFLLDS GDLFLPEDVW LGNLDLPEQV PPSATSPAQA ESRALCPRTG AGSGLGSSLR  60
EKLSRALGWI RDSYRDCEVL IQVWVPTEGA EGLVLTTSSE PFALAPGCER LLNYRAVSTC  120
FQFSAGENSG GALGLPGRVF QGKLPEWSPD VRYFSNYEYP RVNYAQQCDV RGSLALPVFH  180
HHRGGGGGRL SCLGVIEVVM TTERINYRSD YEHICSALQA VDLSSSEALN APRVEVRSDF  240
QLAGLPEIAA ALRASCRAHG FALAQAWIPC ARQGRSGSRH SDGNYEDCIS TVDALCCVND  300
PALAGFHEAC SEHHLLRGQG IVGKAFLMNR PWFSSDITAP CKTEYPLSHH ARMLGLGAAA  360
AVCLHRGAAT GKAEIVLEFI LPKECRRSEE QAAMVNAMLV TVRQACPSWH VLAERQLEEE  420
GLLQVNPQPA SASSENAQES GYYSSPAGDK AKGSKLTKTE KTISLEVLRQ HFSGSLKEAA  480
KVLGVCPTTL KRICRQHGIT RWPARKIKKV GHSLKKLQVV IDSVQGIDGA VHLSSLYDDV  540
RRAPGLVEQE AGKKNVITSL YRSDDQELPS TSNPLSSSCT SGSSRGCSIG REGSSHVPDG  600
PSEEAPFVEE NGGTTWRFSD ELERDYPTEG IPATRDQLQT SGSLGDHSDL KTPFQNKHAA  660
RGLPRVKATH GEEKIRFSLK PNWGVHEVMQ EISKRFNISD MNSVDLRYLD DESEWVLLRC  720
DDDLQVCADL YRTSRIHTIK ISVHHADRPS FMPFGSEDYD LLGYIPRPFT E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	1e-175	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Spipo17G0032300