PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo18G0015200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 248aa MW: 27908.6 Da PI: 10.0123

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo18G0015200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.4	8.5e-34	59	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+el+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Spipo18G0015200 59 LPAGVKFDPTDQELL-EHLEGKTRPETtklhplV---DefipTIEGEtGICYTHPEKLP-GVRKDGLVRHFFHRPSKAYTTGNRKRRKVHagaq 147 799**********.99*99995554332...144333554448******.566666788**************8663444 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+l g kk+Lv+y +g+++k+ekt+Wvmh+y+l Spipo18G0015200 148 ggETRWHKTGKTRPVVA-NGRLAGYKKILVLYagSGKQRKPEKTSWVMHQYHL 199 33556********.999*******666799999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-38	51	218	IPR003441	NAC domain
PROSITE profile	PS51005	33.244	59	218	IPR003441	NAC domain
Pfam	PF02365	4.2E-15	60	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MRWRSRHDDD GDDGHEAEKR PASSADQTLP RKTTTQACPS CGHRVQSPEQ ATLQDLPGLP 60 AGVKFDPTDQ ELLEHLEGKT RPETTKLHPL VDEFIPTIEG ETGICYTHPE KLPGVRKDGL 120 VRHFFHRPSK AYTTGNRKRR KVHAGAQGGE TRWHKTGKTR PVVANGRLAG YKKILVLYAG 180 SGKQRKPEKT SWVMHQYHLG PGEEERDGEL VVSKVFYQTQ PRQCGPIYFK ISIPERAKDL 240 HSNKVIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-12	42	199	2	140	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919316.1	1e-117	NAC domain-containing protein 73
Swissprot	O49459	1e-108	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	E0CTJ0	1e-115	E0CTJ0_VITVI; Uncharacterized protein
STRING	VIT_12s0028g03050.t01	1e-116	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-111	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Spipo18G0015200

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]