PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0016100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 568aa    MW: 62399.5 Da    PI: 6.7066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0016100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13417463455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Spipo18G0016100 417 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 463
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.9E-5250235IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF557815.89E-5151208IPR029016GAF domain-like
PROSITE profilePS5088816.806413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-19416479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-14416467No hitNo description
Gene3DG3DSA:4.10.280.101.5E-18417481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10417463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MGIGAGGRGF WSEEDRAMAV AVLGSQAFDF ITAGNMTAEG LTAVGSDSEL QNKLAALVDG  60
PNPTGLTWNY AIFWQISRSK SGEIILGWGD GHCREPREEE DDHLLRHRHR PQHEEEPNQA  120
MRKRVLQKLN TFFGGSDEEN FALRLDRVTD TEMFFLASMY FSFPRGEGAP GRVFASGEPL  180
WVSDCADDYC VRAFLARATG IRTVVLVPSD SGVLELGSVN SLSEDPQAMQ MITSMISHGR  240
QPKPAASSEE CPRIFGKDLN LGRTVPAVAP KLEEPPWDLQ PAGGDRLAPF PNVRKSLHVW  300
NWNQARFGSS DQTNQLSNQQ RNGVNFPQQK QQNAPAAAAA AVAAAVAAAV APPPPPPARQ  360
IDFSGVARLK SLETEKDDAE LPCKEGRPAA AAAAAGEERR PRKRGRKPAN GREEPLNHVE  420
AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAIAYIT DLQKKLKEME SEREMMDQRR  480
RAAECCPEIE VQTVGDEVVV KVSCPLETHP VSKVIHVLKE AQMNVVESKL SAGKDMVFHT  540
FVVKSHGSEQ MVKDRLVAAF SRESHPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-29411473264Transcription factor MYC2
5gnj_B6e-29411473264Transcription factor MYC2
5gnj_E6e-29411473264Transcription factor MYC2
5gnj_F6e-29411473264Transcription factor MYC2
5gnj_G6e-29411473264Transcription factor MYC2
5gnj_I6e-29411473264Transcription factor MYC2
5gnj_M6e-29411473264Transcription factor MYC2
5gnj_N6e-29411473264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398406RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242396.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242398.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_010242399.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_019051449.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1D1Y6080.0A0A1D1Y608_9ARAE; Transcription factor bHLH13
STRINGXP_010242395.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-88bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]