PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0019000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HSF
Protein Properties Length: 389aa    MW: 43174.1 Da    PI: 5.3024
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0019000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35141042101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sws++++sf+v+++ e+ + +LpkyFkh+nf+SF+RQLn+YgF+kv++e+         weF+++ F +g+++ll+
  Spipo18G0019000  14 FLTKTYDMVDDSSTDSIVSWSQTNDSFIVWNPPELCSVLLPKYFKHNNFSSFIRQLNTYGFRKVDHEQ---------WEFANEDFLRGQRHLLK 98 
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Spipo18G0019000  99 NIHRRK 104
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.08E-349103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.1E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDSSQGSSNS LPPFLTKTYD MVDDSSTDSI VSWSQTNDSF IVWNPPELCS VLLPKYFKHN  60
NFSSFIRQLN TYGFRKVDHE QWEFANEDFL RGQRHLLKNI HRRKPIHSHS PQNQAAATLT  120
DGERRELEDE IQSLKREKNA LVLETQRCAQ QLHGVELQTQ SLAARLQQVE LHHRQIITFL  180
NLVIQRGSSG SGAALLPLSP SPEEDHGKKK RRLLWLDGED DGGAVGSSRR VFDSGPFDRM  240
ESLLDSLEGF VLAVGRASGM EMGDGAAATL AGTPSMVILM KMNASSGDTD GERRLRSPMP  300
HSFPPLDQLS DNRRSWTPEM AESPPRGRGR STASEIDINS DPTPAEGPLT GVNDMFWEQF  360
LTETPGQTDD SGRKSVDCDT AQPVELKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-25310319129Heat shock factor protein 1
5d5v_B9e-25310319129Heat shock factor protein 1
5d5v_D9e-25310319129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207211KKKRR
2207212KKKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916598.11e-114heat stress transcription factor A-4b
TrEMBLA0A3S3NBU91e-111A0A3S3NBU9_9MAGN; Heat shock factor HSF-type
STRINGXP_010242159.11e-110(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-73HSF family protein