PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo18G0024100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

FAR1

Protein Properties

Length: 824aa MW: 93773 Da PI: 7.1171

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo18G0024100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.1	7.1e-24	46	134	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YA ++GFsvr+ + +k+ + ge+ ++ + Cs+eg++ ++kk+ e+++ r tr gC+a++k++++++gk++v ++ eHnH lap Spipo18G0024100 46 DFYNHYAIKAGFSVRRGRDHKN-KMGEVQDKSYFCSCEGYSLKDKKD-ENAKGARLLTRNGCRAQMKISNRTTGKFRVVRFIAEHNHRLAP 134 6***************9999.6677*************999.9999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-20	46	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-28	252	345	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.953	532	568	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.0E-5	540	563	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	543	570	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence Send to blast
MDTVGHRGKE AVARDEADKS VYPCDIPAEL VPQLYMEFES EKDAYDFYNH YAIKAGFSVR 60 RGRDHKNKMG EVQDKSYFCS CEGYSLKDKK DENAKGARLL TRNGCRAQMK ISNRTTGKFR 120 VVRFIAEHNH RLAPPSMCHL LRSQRYLTSR VERSNDENGI LPKMPSCLAG SHDDVHDGSG 180 CPPVGCKNCL CTKRAKEMKA GVAGGILEYL QHMRSNDPDF FCAIEVDVED KVTNAFWADG 240 KMIVDYSHFG DVTCFDTTYK RFNENCPFCL FTGVNNHRQT IIFGAVFMYD ETVDSFKWLL 300 DTFMKAMGGK RPETIITERD DAISTVVASQ WPETHHRLCL WHIYQDVVKQ HSSLAGINSK 360 FSKELQGCLY DCEDKDEFEG MWCAFLKKYD LTDNAWLSEL YGDREKWALA YGRDRFCADM 420 TGNQRNDRMN YQLKKYLDSQ FDIEEFLQQF NVLVEDVRDE ELKKDFKASH AVPTLVFQSE 480 ILKHAAAVYT PTLFLMFQSE MEKVWDSEMI ISSEVGTLSE YKITPFGKTQ AHTVRFDAEN 540 CTVSCSCQKF EFMGLLCAHA LKIMAFKNVR RIPDQYIVKR WTNDAKDRRG RVHHVFTDLP 600 DPKERASNRY RDLRLNFNKL ASKAAETEET YAFAWTELDR LMLLVEDKLK SLSVRNHKVP 660 GRSESGTERV DTDASYENGT NLIDDVESAL GSKNIKTKKS DTCIGSKRKK SALLKTMAKG 720 KGQKEAAKAD ELSSHPQPVA VQIDTINPTS LNQQEPHETS PLNRHTVDRC TSQPFTLVQS 780 SPHDIYQPIC NNGSFSNSIT YQNSNVPTGQ GGIGQGTITC KWI*

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence Send to blast

MDTVGHRGKE AVARDEADKS VYPCDIPAEL VPQLYMEFES EKDAYDFYNH YAIKAGFSVR  60
RGRDHKNKMG EVQDKSYFCS CEGYSLKDKK DENAKGARLL TRNGCRAQMK ISNRTTGKFR  120
VVRFIAEHNH RLAPPSMCHL LRSQRYLTSR VERSNDENGI LPKMPSCLAG SHDDVHDGSG  180
CPPVGCKNCL CTKRAKEMKA GVAGGILEYL QHMRSNDPDF FCAIEVDVED KVTNAFWADG  240
KMIVDYSHFG DVTCFDTTYK RFNENCPFCL FTGVNNHRQT IIFGAVFMYD ETVDSFKWLL  300
DTFMKAMGGK RPETIITERD DAISTVVASQ WPETHHRLCL WHIYQDVVKQ HSSLAGINSK  360
FSKELQGCLY DCEDKDEFEG MWCAFLKKYD LTDNAWLSEL YGDREKWALA YGRDRFCADM  420
TGNQRNDRMN YQLKKYLDSQ FDIEEFLQQF NVLVEDVRDE ELKKDFKASH AVPTLVFQSE  480
ILKHAAAVYT PTLFLMFQSE MEKVWDSEMI ISSEVGTLSE YKITPFGKTQ AHTVRFDAEN  540
CTVSCSCQKF EFMGLLCAHA LKIMAFKNVR RIPDQYIVKR WTNDAKDRRG RVHHVFTDLP  600
DPKERASNRY RDLRLNFNKL ASKAAETEET YAFAWTELDR LMLLVEDKLK SLSVRNHKVP  660
GRSESGTERV DTDASYENGT NLIDDVESAL GSKNIKTKKS DTCIGSKRKK SALLKTMAKG  720
KGQKEAAKAD ELSSHPQPVA VQIDTINPTS LNQQEPHETS PLNRHTVDRC TSQPFTLVQS  780
SPHDIYQPIC NNGSFSNSIT YQNSNVPTGQ GGIGQGTITC KWI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1D1YUK7	0.0	A0A1D1YUK7_9ARAE; Protein FAR1-RELATED SEQUENCE 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Spipo18G0024100