PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0024600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 159aa    MW: 17663.1 Da    PI: 11.2048
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0024600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.33.5e-133290563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     +++rr+ +NRe+ArrsR RK++ ++ L+  v+ L  eN + + + + l +   +++s++
  Spipo18G0024600 32 RKQRRMLSNRESARRSRMRKQKHLDDLTAQVARLRHENNQIIANCKALMQRHLAVESDN 90
                     79****************************************99999998877776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-152892IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.2083093IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-1032102No hitNo description
PfamPF001708.5E-103273IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-123283No hitNo description
CDDcd147022.27E-183383No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MASSSGSGVS SGSAPPIPNS GSKGLRQVMD HRKQRRMLSN RESARRSRMR KQKHLDDLTA  60
QVARLRHENN QIIANCKALM QRHLAVESDN SVLRSEVAAL SNRLESFKEV TQFMNRTNDS  120
GILREAPPPQ AIDSFPVNPW NLLSVNQPIM ASPDMLQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14451RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027179537.19e-47bZIP transcription factor 11-like
RefseqXP_027179549.19e-47bZIP transcription factor 11-like
TrEMBLA0A2U1KGG37e-47A0A2U1KGG3_ARTAN; Basic leucine-zipper 2
STRINGXP_010105351.13e-45(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.16e-36basic leucine-zipper 44