PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0031000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family RAV
Protein Properties Length: 363aa    MW: 39841.6 Da    PI: 9.5312
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0031000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.2e-1460108155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      ++r++lg+f  + eAaka++aa+++++g
  Spipo18G0031000  60 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEAEAAKAYDAAAQRFRG 108
                      78****9888.8*********3.....5**********99*************98 PP
2B396.91.3e-30189286193
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+ltpsdv+k++rlv+pk++ae+h     +g+  +++ + +ed+ g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD v F+++   e
  Spipo18G0031000 189 FDKALTPSDVGKLNRLVIPKQHAEKHfplqvNGPACKGVLVNFEDPCGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKALKAGDLVGFHRSTGPE 282
                      89***************************998888899**************************************************775555 PP

                      E..E CS
               B3  90 felv 93 
                      ++l+
  Spipo18G0031000 283 RQLF 286
                      5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.42E-1360115No hitNo description
SuperFamilySSF541719.81E-1760116IPR016177DNA-binding domain
PROSITE profilePS5103219.63861116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2061116IPR001471AP2/ERF domain
SMARTSM003804.9E-2861122IPR001471AP2/ERF domain
PfamPF008474.1E-961108IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.9E-38185292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-30187288IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-29187278No hitNo description
PfamPF023622.7E-27189286IPR003340B3 DNA binding domain
SMARTSM010195.5E-23189293IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352189292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDSSCIEEAS SESERVAAPA PVASLSFAIP QKLQRLGSGG SVVLDPELCG EAESRKLPSS  60
QYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEAEAAKAYD AAAQRFRGRD AVTNFKPLSE  120
TDPEGAAELL FLRSHSKSEI VDMLRKHTYH DELLQSKRAI ALTSSAELGS TGCLFRSDRP  180
TAAAREKLFD KALTPSDVGK LNRLVIPKQH AEKHFPLQVN GPACKGVLVN FEDPCGKVWR  240
FRYSYWNSSQ SYVLTKGWSR FVKEKALKAG DLVGFHRSTG PERQLFIDMK PRVAAAVPGV  300
LPVKADSRPL QVMRLFGVNI VNVPGGGHRE VDESSAGKRL LEIKFLPPAQ LCKRQCVGTL  360
CV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5218629211117DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400502.11e-155PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-131RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A3S3QJR91e-154A0A3S3QJR9_9MAGN; AP2/ERF and B3 domain-containing protein
STRINGXP_008791228.11e-154(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-121related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]