PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo18G0038100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB_related

Protein Properties

Length: 100aa MW: 11240.4 Da PI: 9.606

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo18G0038100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.9e-10	5	50	2	45
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ +++ +a + + ++ +W ++ar++g g+++ ++k ++ Spipo18G0038100 5 SPWTAKQNKQFERALAVYDKDtpdRWQKVAREVG-GKSPDEVKRHYD 50 58******************************.********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.771	1	53	IPR017877	Myb-like domain
SMART	SM00717	4.4E-8	3	55	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.8E-13	5	61	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-7	6	50	IPR001005	SANT/Myb domain
CDD	cd00167	5.90E-7	6	49	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-5	7	50	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MASSSPWTAK QNKQFERALA VYDKDTPDRW QKVAREVGGK SPDEVKRHYD DLIDDLRCIE 60 SGRVPVPNYR SSASRSGGGG GGGRERLDEE QRFRHLKLH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-34	3	98	7	92	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003545280.1	4e-41	protein RADIALIS-like 4 isoform X1
Refseq	XP_028198407.1	4e-41	protein RADIALIS-like 4 isoform X1
Swissprot	Q58FS3	2e-34	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A445H2R2	9e-40	A0A445H2R2_GLYSO; Protein RADIALIS-like 1 isoform A
TrEMBL	K7M5F6	9e-40	K7M5F6_SOYBN; Uncharacterized protein
STRING	GLYMA14G08101.1	2e-40	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	2e-34	RAD-like 6

Link Out ? help Back to Top
Phytozome	Spipo18G0038100

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]