PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0038700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 238aa    MW: 25177.2 Da    PI: 9.2122
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0038700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20117151135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Spipo18G0038700 117 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 151
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-18111165IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-14113152No hitNo description
PROSITE profilePS5011413.943115147IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-17115151IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.55E-13116148No hitNo description
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
PfamPF003205.3E-18117151IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQQCNSNNRR NCSTDAQGGG AAMPCPRGLF QGVGGGGPFS IFFAINEEDA NPPPSLAVDC  60
TLSLGTPSTR QLSAKTSLVP SNYSLRLDLL PSPSKQATPS SCGSRIGGDQ LLLPRRCANC  120
DTTSTPLWRN GPRGPKSLCN ACGIRYKKEE RRAASSAVVS FTSSSPSSSS LPSGQQQYLP  180
ANYGYRQPWG CPSTRLASTA AVQRRSPSPA EAAMEPTVLS YLPWQRFNVG ATAHFQD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800719.12e-41GATA transcription factor 19
TrEMBLA0A2H3YM875e-40A0A2H3YM87_PHODC; GATA transcription factor 19
STRINGXP_008800719.18e-41(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-30GATA transcription factor 20