PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0001500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family DBB
Protein Properties Length: 209aa    MW: 22256.2 Da    PI: 6.7335
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0001500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.4e-07447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e + fC  ++  lC  C ++ H        H++vpl
  Spipo19G0001500  4 LCNACEAAESSVFCCADEAALCWACDQKVHAAnklaskHQRVPL 47
                     7******99*********************66899999999986 PP
2zf-B_box30.66.7e-105695437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +kC+ +++ +  +fC +++ llC+ C +++H+       H
  Spipo19G0001500 56 PKCDICQDAPGYFFCLNDRALLCRACDVTIHSVnslvsaH 95
                     79*****************************434555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.377147IPR000315B-box-type zinc finger
PfamPF006431.5E-5347IPR000315B-box-type zinc finger
CDDcd000211.20E-8347No hitNo description
SMARTSM003365.9E-10447IPR000315B-box-type zinc finger
SMARTSM003361.6E-1353100IPR000315B-box-type zinc finger
CDDcd000211.30E-756100No hitNo description
PfamPF006432.0E-85696IPR000315B-box-type zinc finger
PROSITE profilePS501198.58958100IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKILCNACEA AESSVFCCAD EAALCWACDQ KVHAANKLAS KHQRVPLTSS SSSLVPKCDI  60
CQDAPGYFFC LNDRALLCRA CDVTIHSVNS LVSAHQRFLV TGVRVGIEPN GCPSSLAKEQ  120
ETPQPPPKLA SEVSLSMSLS RGGHKVVSSQ VGRNESFPVS RAVVNGGSTT ASTSGWPLNE  180
FFGEDFNQDC GFQGNESSKV GPILSCHFL
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794150.13e-73B-box zinc finger protein 22
SwissprotQ9SYM23e-61BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1D1YGE41e-83A0A1D1YGE4_9ARAE; Putative salt tolerance-like protein At1g78600 (Fragment)
STRINGXP_008794150.11e-72(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.24e-62light-regulated zinc finger protein 1