PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo19G0011600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 292aa MW: 31247 Da PI: 5.9581

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo19G0011600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.7e-05	183	222	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++ + L++l+ + +K + a++L++Av YIk Lq Spipo19G0011600 183 VRKEKLSDRVAALQQLVAPF-----GKTDTASVLTEAVGYIKFLQ 222 577899999999**9998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.443	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-11	182	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.26E-7	182	226	No hit	No description
SMART	SM00353	0.0018	183	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-9	186	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MPNRHSMLMI SLIRKGEDFS PSNKDGHFPG SFVDPKYGLG SSLPHPSSTS LVPEIGLQRS 60 SISDTCDHQA QLGGVTEEPS YPFLKLTSCG ALWNPGGDNS ARGRLYEFST TPDESRCGSG 120 SDLVGSSPSS SNSFVSPFAM QELHAMEVLG SSGFDPDGAE AFPPAAKKPR LQPRSSSSPH 180 LKVRKEKLSD RVAALQQLVA PFGKTDTASV LTEAVGYIKF LQEQVQTLSM PYLGSSRKRT 240 IGTIQDVSNE VEEDIMPDLT SRGLCLVPLA YTSYFTSESA SAWSPSRFGG T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	3e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo19G0011600