PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0021800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 143aa    MW: 15327.6 Da    PI: 10.4181
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0021800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-192052133
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                     Cs Cgt+ TplWRrgp g+k+LCnaCG++yrk 
  Spipo19G0021800 20 CSDCGTSRTPLWRRGPAGPKSLCNACGIRYRKA 52
                     *******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-161472IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-141855No hitNo description
Gene3DG3DSA:3.30.50.103.6E-171953IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.42E-141955No hitNo description
PROSITE profilePS5011413.7052050IPR000679Zinc finger, GATA-type
PfamPF003201.5E-172052IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402045IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAGKVERGVC PDMASSLSVC SDCGTSRTPL WRRGPAGPKS LCNACGIRYR KAKRYGATPS  60
TAVADQRRND GGGRKTPTPS KTASSSAGSI ELRKEAKLRR RWETLWLLME ESGKLELSSG  120
KEAVEAAMLL MAMSSGLFVH TY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-17GATA transcription factor 16