PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0026300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 219aa    MW: 24380 Da    PI: 10.7532
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0026300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.97e-2746148198
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k  tps v+k+ rlv+pk++ae++   +++ + sk + l++ ++  ++W+++++y+++s++yvltkGW++Fvk+++L++ D+v F+     e
  Spipo19G0026300  46 FDKGVTPSEVGKLTRLVIPKQHAEKYfppQIDGAASKVILLNSVDSgrKTWRFRYSYWNSSQSYVLTKGWSRFVKEKRLNADDVVSFQQPTGPE 139
                      88999***********************94444556566666544346****************************************544477 PP

                      E..EEEEE- CS
               B3  90 felvvkvfr 98 
                      ++l++++ r
  Spipo19G0026300 140 RQLYISWKR 148
                      778887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-3441156IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-2444132No hitNo description
SuperFamilySSF1019365.62E-2544148IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1946150IPR003340B3 DNA binding domain
PfamPF023623.3E-2346149IPR003340B3 DNA binding domain
PROSITE profilePS5086312.71746150IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MLRKHTYRDE LQQGKRALGP TYGASPVAVH RHAISGVGSA AREHLFDKGV TPSEVGKLTR  60
LVIPKQHAEK YFPPQIDGAA SKVILLNSVD SGRKTWRFRY SYWNSSQSYV LTKGWSRFVK  120
EKRLNADDVV SFQQPTGPER QLYISWKRRV SAAASTSIPG FPPFQPARPI QMVRLFSVNI  180
IKEAGGTVAE IICSMRSQGP TQVPWERGAL IAYIAIVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-454315911127DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018859781.18e-67PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ8RZX96e-53Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A2G9I1N79e-66A0A2G9I1N7_9LAMI; Uncharacterized protein
TrEMBLA0A2I4HUE52e-65A0A2I4HUE5_JUGRE; AP2/ERF and B3 domain-containing transcription repressor RAV2-like
STRINGXP_010265251.12e-65(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.12e-54RAV family protein