PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0026400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 116aa    MW: 13077 Da    PI: 9.0806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0026400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.73.4e-0979114950
              AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                      ++ +grW A+I++      ++r++lg+f    +Aa+a++ a+
  Spipo19G0026400  79 RP-NGRWGAQIYEK-----HQRVWLGTFNDDAKAARAYEVAA 114
                      45.8*********3.....5**********9*******9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.64E-1471114No hitNo description
SuperFamilySSF541719.81E-1072114IPR016177DNA-binding domain
PROSITE profilePS5103214.572115IPR001471AP2/ERF domain
SMARTSM003801.3E-472115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-1372114IPR001471AP2/ERF domain
PfamPF008475.5E-579115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MDAYVWMLPP GPILNSMKSS AGCEVWGGMN LAILWSTLIH PHKKFQRTRR NTTVALDLEI  60
GLEEPRKPPS SQYEEVVPRP NGRWGAQIYE KHQRVWLGTF NDDAKAARAY EVAAQ*
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386126.16e-26PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9LS067e-24RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
SwissprotQ9ZWM97e-24RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A200Q3K71e-25A0A200Q3K7_9MAGN; AP2/ERF domain
STRINGAquca_026_00225.11e-24(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1870756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.13e-26related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]